Changelog

Python 3.13, bugs fixed, improved sample grouping UI, and handling freezes in containers with incompatible architectures.

Bugfix release to improve stability.

Feature updates and improvements​

• Azure: Prefer Nextflow-provided SAS token for authentication
• Define a default exit code 174 on Fusion IO error

Bug fixes​

• Move folders that contain subfolders and big files
• Propagate truncating to zero to remote storage
• File moves overwriting files scheduled for upload

How to pin this version​

fusion {
  enabled = true
  containerConfigUrl = 'https://fusionfs.seqera.io/releases/v2.4.4-amd64.json'
}

Bug fixes​

• Fix build seceded and status response by @pditommaso in 8a760b39

Full changelog: https://github.com/seqeralabs/wave/compare/v1.12.3...v1.12.4

Feature updates and improvements​

• Data Studios
  • Add direct Data Explorer browse link to mounted data items.
  • Make Studio details page tabs routable.
• Data Explorer
  • Highlight invalid custom datalinks.
  • Remove folder validation.
• Updated Azure service principal credentials.
• Define cache configuration once, only override changes.
• Disable AWS and Google Batch spot instance auto retry.
• Update 204 pipeline schema response description.
• Patch workflow revision.
• Render Parameters UI correctly with new schemas based on 2020-12 draft.
• Upgrade to Angular 16.
• Pipeline launch form: Delegate form creation to a form builder service.

Bug fixes​

• Connection to Redis SSL server.
• pairingId declaration in API schema.
• Copying empty list for cloud data links.
• Visual glitches in launch form.
• Datalink status always null.
• Update last used field in compute environment when creating a data studio job.
• Terminated by Tower error.

Bug fixes​

• Fix build status completion of submit exception by @pditommaso in 3c3af360
• Fix Singularity build mounts by @pditommaso in 3b338b29

Full changelog: https://github.com/seqeralabs/wave/compare/v1.12.2...v1.12.3

Feature updates and improvements​

• Refactor container build service by @pditommaso in 1a858c12
• Remove unused code by @pditommaso in 268c76ea

Bug fixes​

• Fix remove entries permanently from stream once consumed by @pditommaso in adfad9d6

Full Changelog: https://github.com/seqeralabs/wave/compare/v1.12.1...v1.12.2

Bug fixes​

• Fix stream check for new messages by @pditommaso in 16a7e256

Full changelog: https://github.com/seqeralabs/wave/compare/v1.12.0...v1.12.1

Feature updates and improvements​

• Change K8s delete job propagation policy to foreground by @munishchouhan in https://github.com/seqeralabs/wave/pull/595
• Improve blob cache reliability by @pditommaso in https://github.com/seqeralabs/wave/pull/596
• Add trusted builds timeout by @pditommaso in https://github.com/seqeralabs/wave/pull/600
• Update Wave rate limits by @gavinelder in https://github.com/seqeralabs/wave/pull/606
• Refresh Wave documentation by @jason-seqera in https://github.com/seqeralabs/wave/pull/516
• Links to Platform docs must be external to resolve by @jason-seqera in https://github.com/seqeralabs/wave/pull/613
• Improve container view page by @pditommaso in https://github.com/seqeralabs/wave/pull/615
• Add /v1alpha2/container/token by @munishchouhan in https://github.com/seqeralabs/wave/pull/609
• Add GET /v1alpha2/container/token in TypeSpec by @munishchouhan in https://github.com/seqeralabs/wave/pull/618
• Add job manager by @pditommaso in https://github.com/seqeralabs/wave/pull/605
• Add build in progress status in build page by @munishchouhan in https://github.com/seqeralabs/wave/pull/607
• Add bioinformatics example in docs by @munishchouhan in https://github.com/seqeralabs/wave/pull/621
• Converge job service by @pditommaso in https://github.com/seqeralabs/wave/pull/620
• Simplify tests by @pditommaso in https://github.com/seqeralabs/wave/pull/627
• Improve registry auth error handling by @pditommaso in https://github.com/seqeralabs/wave/pull/628
• Do not retry on build failure by @pditommaso in https://github.com/seqeralabs/wave/pull/632
• Remove unneeded timeout logic by @pditommaso in https://github.com/seqeralabs/wave/pull/633
• Deferred resources cleanup by @pditommaso in https://github.com/seqeralabs/wave/pull/636
• Add containerImage in scan by @munishchouhan in https://github.com/seqeralabs/wave/pull/635
• Use public repo for s5cmd by @pditommaso in https://github.com/seqeralabs/wave/pull/639
• Bump Trivy to 0.55 by @pditommaso in https://github.com/seqeralabs/wave/pull/638
• Update scan model by @pditommaso in https://github.com/seqeralabs/wave/pull/637
• Add entropy to Cron services by @pditommaso in https://github.com/seqeralabs/wave/pull/640
• Increase cache-tower-client to 1 min by @pditommaso in https://github.com/seqeralabs/wave/pull/641
• Improve blob cache info by @pditommaso in https://github.com/seqeralabs/wave/pull/644
• Improve job dispatcher by @pditommaso in https://github.com/seqeralabs/wave/pull/645
• Run docker process in background by @pditommaso in https://github.com/seqeralabs/wave/pull/647

Bug fixes​

• Fix docs link by @jason-seqera in https://github.com/seqeralabs/wave/pull/611
• Fix outdated Platform docs URLs on nextflow by @llewellyn-sl in https://github.com/seqeralabs/wave/pull/612
• Fix failure duration by @pditommaso in https://github.com/seqeralabs/wave/pull/643
• Fix K8s job status detection by @pditommaso in https://github.com/seqeralabs/wave/pull/630
• Fix retry policy delay multiplier by @pditommaso in https://github.com/seqeralabs/wave/pull/629
• Fix too many requests error by @pditommaso in https://github.com/seqeralabs/wave/pull/610

Breaking changes​

• Build status records used by this version are not compatible 1.11.x and earlier versions. No builds should be running while deploying this version

New Contributors​

• @gavinelder made their first contribution in https://github.com/seqeralabs/wave/pull/606

Full changelog: https://github.com/seqeralabs/wave/compare/v1.10.4...v1.12.0

Feature updates and improvements​

• Add rate limiter to container request by @pditommaso in a3c63525

Full changelog: https://github.com/seqeralabs/wave/compare/v1.11.0...v1.11.1

Bug fixes​

• Data Explorer
  • Add routing to enable task working directory navigation using Data Explorer in personal workspaces.
• Remove -/+ increment buttons from numeric input components in Platform, including compute environment and launch form interfaces.
• Hide compute environment variables section actions when component is disabled (previously indicated that environment variables could be edited in this state).